Top cofit genes for GFF4844 from Variovorax sp. SCN45

Conjugative transfer protein TrbL
SEED: Conjugative transfer protein TrbL
KEGG: type IV secretion system protein TrbL

Rank Hit Name Description Conserved? Cofitness  
1 GFF4551 Putative preQ0 transporter YhhQ no 0.61
2 GFF1401 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.60
3 GFF2254 HYPOTHETICAL/UNKNOWN PROTEIN no 0.60
4 GFF1546 Tripartite tricarboxylate transporter TctA family no 0.60
5 GFF4950 ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) no 0.59
6 GFF745 BUG/TctC family periplasmic protein no 0.57
7 GFF1559 Mg(2+)-transport-ATPase-associated protein MgtC no 0.55
8 GFF782 Alpha-ketoglutarate-dependent dioxygenase AlkB (EC 1.14.11.33) no 0.55
9 GFF4980 Transcriptional regulator, AsnC family no 0.55
10 GFF310 FIG025233: SAM-dependent methyltransferases no 0.55
11 GFF1113 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.54
12 GFF1733 Cell wall-associated hydrolases (invasion-associated proteins) no 0.54
13 GFF7093 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) no 0.53
14 GFF3525 Protein tyrosine/serine phosphatase no 0.53
15 GFF2367 Transcriptional regulator, LysR family no 0.53
16 GFF972 no description no 0.52
17 GFF1385 Multidrug resistance transporter, Bcr/CflA family no 0.52
18 GFF5889 Uracil-DNA glycosylase, family 1 (EC 3.2.2.27) no 0.52
19 GFF3592 hypothetical protein no 0.52
20 GFF6128 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) no 0.51

Or look for negative cofitness