Top cofit genes for GFF4788 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

RNA polymerase sigma factor RpoS
SEED: RNA polymerase sigma factor RpoS
KEGG: RNA polymerase nonessential primary-like sigma factor

Rank	Hit	Name	Description	Conserved?	Cofitness
1	GFF4789		Lipoprotein NlpD	0.95	0.94
2	GFF2698		Exoribonuclease II (EC 3.1.13.1)	0.25	0.87
3	GFF716		L,D-transpeptidase YbiS	no	0.86
4	GFF2907		HTH-type transcriptional regulator hdfR	0.41	0.84
5	GFF1311		FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated	0.62	0.84
6	GFF4839		BarA sensory histidine kinase (= VarS = GacS)	0.79	0.83
7	GFF2906		Protein yifE	0.31	0.82
8	GFF4579		tRNA-i(6)A37 methylthiotransferase	0.84	0.81
9	GFF3794		SanA protein	0.40	0.81
10	GFF1058		NadR transcriptional regulator / Nicotinamide-nucleotide adenylyltransferase, NadR family (EC 2.7.7.1) / Ribosylnicotinamide kinase (EC 2.7.1.22)	0.69	0.81
11	GFF4286		Shikimate kinase III (EC 2.7.1.71)	0.57	0.80
12	GFF2016		Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8)	0.41	0.80
13	GFF3886		UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)	0.57	0.80
14	GFF2303		Putative uncharacterized protein YiiQ	no	0.80
15	GFF3996		DNA-cytosine methyltransferase (EC 2.1.1.37)	0.33	0.79
16	GFF3146		'3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)' transl_table=11	0.72	0.78
17	GFF3054		Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC	0.68	0.77
18	GFF3397		Transcription-repair coupling factor	0.36	0.77
19	GFF1423		Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57)	0.44	0.77
20	GFF2679		Transcriptional repressor protein TyrR	no	0.77

Or look for negative cofitness