Top cofit genes for GFF477 from Variovorax sp. SCN45

Transcriptional regulator, LysR family
SEED: LysR-family transcriptional regulator clustered with PA0057

Rank Hit Name Description Conserved? Cofitness  
1 GFF5145 hypothetical protein no 0.59
2 GFF1420 Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8) no 0.53
3 GFF778 Channel-forming transporter/cytolysins activator of TpsB family no 0.53
4 GFF1882 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-) no 0.53
5 GFF6860 Epoxide hydrolase (EC 3.3.2.9) no 0.52
6 GFF6755 hypothetical protein no 0.51
7 GFF4056 Copper/silver efflux RND transporter, transmembrane protein CusA 0.25 0.51
8 GFF5213 hypothetical protein no 0.49
9 GFF755 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB no 0.48
10 GFF7107 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases no 0.47
11 GFF3459 Aliphatic amidase AmiE (EC 3.5.1.4) no 0.47
12 GFF5064 Exonuclease SbcC no 0.47
13 GFF5957 Uncharacterized MFS-type transporter 0.29 0.47
14 GFF4257 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.47
15 GFF1569 BUG/TctC family periplasmic protein no 0.47
16 GFF501 hypothetical protein no 0.47
17 GFF4723 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) 0.31 0.47
18 GFF1939 hypothetical protein no 0.47
19 GFF3169 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.46
20 GFF2339 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.46

Or look for negative cofitness