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  • Top cofit genes for GFF4766 from Variovorax sp. SCN45

    identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676
    SEED: FIG004851: hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5185 FIG00732904: hypothetical protein no 0.69
    2 GFF1093 Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1) no 0.64
    3 GFF6390 GtrA-like protein no 0.64
    4 GFF2531 Transcriptional regulator, AsnC family no 0.64
    5 GFF327 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) no 0.61
    6 GFF2958 hypothetical protein no 0.60
    7 GFF3511 no description no 0.59
    8 GFF5710 no description no 0.58
    9 GFF5774 RNA polymerase sigma factor for flagellar operon 0.25 0.58
    10 GFF5969 Transcriptional regulator, GntR family no 0.58
    11 GFF452 Chloride channel protein no 0.58
    12 GFF2454 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) no 0.57
    13 GFF6395 hypothetical protein no 0.57
    14 GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.34 0.56
    15 GFF6876 Aminotransferase, DegT/DnrJ/EryC1/StrS family 0.51 0.56
    16 GFF6042 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) no 0.56
    17 GFF5401 2-keto-3-deoxy-L-fuconate dehydrogenase no 0.56
    18 GFF318 Uncharacterized protein YjgR 0.44 0.55
    19 GFF7295 HPr kinase/phosphorylase no 0.54
    20 GFF967 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) no 0.54

    Or look for negative cofitness