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  • Top cofit genes for GFF476 from Variovorax sp. SCN45

    InterPro IPR005134 COGs COG2862
    SEED: InterPro IPR005134 COGs COG2862

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4881 HYPOTHETICAL/UNKNOWN PROTEIN 0.44 0.63
    2 GFF5620 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.60
    3 GFF801 Murein hydrolase activator NlpD no 0.60
    4 GFF1354 FMN-dependent NADH-azoreductase (EC 1.7.1.6) no 0.56
    5 GFF5968 no description no 0.53
    6 GFF4098 hypothetical protein no 0.53
    7 GFF959 Phage holin no 0.53
    8 GFF2713 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.52
    9 GFF1186 Ferrichrome-iron receptor no 0.52
    10 GFF3085 no description no 0.51
    11 GFF7369 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) no 0.51
    12 GFF4804 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE no 0.51
    13 GFF6927 Transcriptional regulator, ArsR family 0.37 0.51
    14 GFF4365 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) no 0.51
    15 GFF7386 no description no 0.51
    16 GFF4226 Acryloyl-CoA reductase AcuI/YhdH (EC 1.3.1.84) no 0.51
    17 GFF882 Outer membrane porin no 0.50
    18 GFF3647 Cytochrome b no 0.50
    19 GFF6006 BUG/TctC family periplasmic protein no 0.50
    20 GFF3414 Fumarylacetoacetase (EC 3.7.1.2) no 0.49

    Or look for negative cofitness