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  • Top cofit genes for PS417_24100 from Pseudomonas simiae WCS417

    transcriptional regulator PdhR
    SEED: Lactate-responsive regulator LldR in Enterobacteria, GntR family
    KEGG: GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_24765 membrane protein 0.59 0.48
    2 PS417_16570 isocitrate lyase 0.70 0.47
    3 PS417_21750 acetyl-CoA synthetase 0.75 0.46
    4 PS417_25920 pyrroloquinoline quinone biosynthesis protein PqqF 0.38 0.44
    5 PS417_17480 branched-chain amino acid ABC transporter substrate-binding protein 0.33 0.40
    6 PS417_25940 pyrroloquinoline quinone biosynthesis protein PqqE 0.60 0.40
    7 PS417_17495 multidrug ABC transporter permease no 0.39
    8 PS417_17435 dehydrogenase no 0.39
    9 PS417_17485 membrane protein 0.32 0.39
    10 PS417_19965 histidine kinase 0.80 0.38
    11 PS417_26040 malate synthase 0.72 0.38
    12 PS417_25930 pyrroloquinoline quinone biosynthesis protein PqqC no 0.38
    13 PS417_17450 amino acid ABC transporter substrate-binding protein no 0.35
    14 PS417_04860 ATPase 0.41 0.33
    15 PS417_17015 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.34 0.33
    16 PS417_04070 porin no 0.33
    17 PS417_17490 ABC transporter ATP-binding protein no 0.31
    18 PS417_21030 GntR family transcriptional regulator 0.52 0.30
    19 PS417_17425 hypothetical protein no 0.30
    20 PS417_09725 transporter no 0.29

    Or look for negative cofitness