Top cofit genes for GFF47 from Variovorax sp. SCN45

DNA double-strand break repair Rad50 ATPase

Rank Hit Name Description Conserved? Cofitness  
1 GFF7318 RND efflux system, membrane fusion protein no 0.62
2 GFF3963 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) no 0.59
3 GFF1891 Transcriptional regulator, GntR family no 0.58
4 GFF1098 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) no 0.58
5 GFF6379 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.57
6 GFF6581 Coupling protein VirD4, ATPase required for T-DNA transfer no 0.57
7 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) no 0.57
8 GFF4593 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) no 0.56
9 GFF5335 Phospholipid ABC transporter permease protein MlaE no 0.56
10 GFF2382 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66) no 0.56
11 GFF6887 Transporter, LysE family no 0.56
12 GFF3738 Uncharacterized protein YraP no 0.56
13 GFF699 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.55
14 GFF3302 no description no 0.55
15 GFF4773 Broad-specificity amino acid ABC transporter, ATP-binding protein 1 no 0.55
16 GFF3152 hypothetical protein no 0.55
17 GFF2870 Nicotinate phosphoribosyltransferase (EC 6.3.4.21) no 0.54
18 GFF6447 no description no 0.54
19 GFF2224 ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.54
20 GFF6382 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.54

Or look for negative cofitness