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  • Top cofit genes for GFF468 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: LysR family transcriptional regulator PA2877

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4 VapC toxin protein no 0.58
    2 GFF4259 Transcriptional regulator, DeoR family no 0.55
    3 GFF7171 Transcriptional regulator DmlR, LysR family no 0.53
    4 GFF1409 hypothetical protein no 0.52
    5 GFF5299 TonB-dependent receptor 0.54 0.52
    6 GFF4958 ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.52
    7 GFF3226 no description no 0.51
    8 GFF2277 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.50
    9 GFF1329 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) 0.19 0.49
    10 GFF3402 no description no 0.47
    11 GFF2107 no description no 0.47
    12 GFF5722 Flagellar P-ring protein FlgI 0.51 0.47
    13 GFF5715 Flagellar basal-body rod protein FlgB 0.37 0.47
    14 GFF2556 UPF0337 family protein no 0.47
    15 GFF3177 hypothetical protein no 0.47
    16 GFF4673 hypothetical protein no 0.45
    17 GFF6080 Putative deoxyribonuclease YjjV 0.37 0.45
    18 GFF1574 Alpha-aminoadipate aminotransferase (EC 2.6.1.39) @ Leucine transaminase (EC 2.6.1.6) @ Valine transaminase no 0.45
    19 GFF687 Dihydroxy-acid dehydratase (EC 4.2.1.9) no 0.45
    20 GFF2074 hypothetical protein no 0.45

    Or look for negative cofitness