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  • Top cofit genes for GFF4621 from Variovorax sp. SCN45

    Hydroxycarboxylate dehydrogenase (NADP+) HcxB
    SEED: Malate dehydrogenase (EC 1.1.1.37)
    KEGG: uncharacterized oxidoreductase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1448 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.50
    2 GFF5917 T6SS component TssB (ImpB/VipA) no 0.49
    3 GFF2617 no description no 0.48
    4 GFF2799 Molybdopterin-guanine dinucleotide biosynthesis protein MobB no 0.48
    5 GFF1018 23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185) no 0.46
    6 GFF6621 Mobile element protein no 0.45
    7 GFF7300 Biopolymer transport protein ExbD/TolR no 0.45
    8 GFF6849 MotA/TolQ/ExbB proton channel family protein no 0.44
    9 GFF7366 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.44
    10 GFF4129 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.44
    11 GFF89 hypothetical protein no 0.44
    12 GFF4189 NUDIX hydrolase no 0.43
    13 GFF4775 Broad-specificity amino acid ABC transporter, substrate-binding protein no 0.43
    14 GFF1741 UPF0324 inner membrane protein YeiH no 0.43
    15 GFF1529 Transcriptional regulator, AcrR family no 0.43
    16 GFF617 no description no 0.43
    17 GFF1515 Flagellar hook-length control protein FliK no 0.43
    18 GFF6379 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.42
    19 GFF7080 no description no 0.42
    20 GFF6571 Conjugative transfer protein TrbI no 0.42

    Or look for negative cofitness