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    • Top cofit genes for GFF4618 from Variovorax sp. SCN45

    Hexuronate utilization operon transcriptional repressor ExuR
    SEED: Hexuronate utilization operon transcriptional repressor ExuR

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1323 Methionine aminopeptidase (EC 3.4.11.18) 0.28 0.62
    2 GFF3258 hypothetical protein no 0.60
    3 GFF814 BUG/TctC family periplasmic protein no 0.57
    4 GFF6220 hypothetical protein no 0.55
    5 GFF1664 redox proteins related to the succinate dehydrogenases and fumarate reductases no 0.55
    6 GFF1745 Acyl-CoA dehydrogenase no 0.55
    7 GFF5326 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) no 0.54
    8 GFF6082 MoxR-like ATPase in aerotolerance operon no 0.54
    9 GFF5528 Conjugative transfer protein TrbL no 0.54
    10 GFF2786 Sulfate transporter family protein no 0.53
    11 GFF5051 MBL-fold metallohydrolase SPO0683 no 0.53
    12 GFF6061 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17) no 0.52
    13 GFF6823 BUG/TctC family periplasmic protein no 0.52
    14 GFF191 (Y14336) putative extracellular protein containing predicted 35aa signal peptide no 0.51
    15 GFF2927 Peptidylprolyl isomerase, FKBP-type (EC 5.2.1.8) no 0.51
    16 GFF1499 BUG/TctC family periplasmic protein no 0.50
    17 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) no 0.50
    18 GFF1020 hypothetical protein no 0.50
    19 GFF6834 no description no 0.50
    20 GFF6711 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) no 0.50

    Or look for negative cofitness