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  • Top cofit genes for GFF4614 from Sphingobium sp. HT1-2

    Transcriptional regulator, AcrR family
    SEED: transcriptional regulator, TetR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1145 RNA-binding protein Hfq / RNA-binding protein Hfq no 0.79
    2 GFF2900 HflK protein no 0.77
    3 GFF4190 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme 0.71 0.76
    4 GFF750 Ribosomal silencing factor RsfA no 0.76
    5 GFF2791 Two-component system sensor histidine kinase no 0.76
    6 GFF1249 Capsular polysaccharide biosynthesis protein no 0.75
    7 GFF4134 hypothetical protein no 0.75
    8 GFF2594 Efflux ABC transporter, permease/ATP-binding protein no 0.75
    9 GFF4205 Ubiquinol-cytochrome C chaperone no 0.74
    10 GFF4047 RNA polymerase ECF-type sigma factor no 0.74
    11 GFF2254 DksA family protein PA5536 (no Zn-finger) 0.34 0.74
    12 GFF3286 Epoxyqueuosine reductase (EC 1.17.99.6) QueG no 0.74
    13 GFF4760 tRNA-modifying protein YgfZ no 0.74
    14 GFF966 hypothetical protein no 0.74
    15 GFF5034 hypothetical protein no 0.74
    16 GFF785 Ammonium transporter no 0.73
    17 GFF3760 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit no 0.73
    18 GFF2595 hypothetical protein no 0.73
    19 GFF4160 Ankyrin no 0.72
    20 GFF4106 PDZ domain family protein 0.47 0.71

    Or look for negative cofitness