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  • Top cofit genes for GFF4612 from Variovorax sp. SCN45

    Short-chain dehydrogenase/reductase SDR
    SEED: Short-chain dehydrogenase/reductase SDR

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5834 Oxidoreductase, GMC family no 0.60
    2 GFF5854 Type I secretion system, outer membrane component LapE no 0.59
    3 GFF1926 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.57
    4 GFF648 integral membrane sensor signal transduction histidine kinase no 0.56
    5 GFF608 VgrG protein no 0.56
    6 GFF7171 Transcriptional regulator DmlR, LysR family 0.58 0.56
    7 GFF4603 Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein no 0.55
    8 GFF3148 no description no 0.55
    9 GFF1597 Acetolactate synthase large subunit (EC 2.2.1.6) 0.26 0.55
    10 GFF2761 Glutamine ABC transporter, permease protein GlnP no 0.53
    11 GFF6334 no description no 0.53
    12 GFF5047 hypothetical protein no 0.52
    13 GFF3074 Putative polysaccharide deacetylase 0.54 0.52
    14 GFF6841 hypothetical protein no 0.50
    15 GFF1684 no description no 0.50
    16 GFF1606 Cys-tRNA(Pro) deacylase YbaK no 0.49
    17 GFF1924 Aliphatic sulfonate monooxygenase family, FMNH2- or F420-dependent 0.38 0.49
    18 GFF3602 Enoyl-CoA hydratase (EC 4.2.1.17) 0.28 0.48
    19 GFF5818 Two-component transcriptional response regulator, NarL/FixJ family 0.44 0.48
    20 GFF4934 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) no 0.48

    Or look for negative cofitness