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  • Top cofit genes for GFF4554 from Variovorax sp. SCN45

    Protease HtpX
    SEED: Heat shock protease
    KEGG: heat shock protein HtpX

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2046 no description no 0.53
    2 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.52
    3 GFF4168 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) no 0.50
    4 GFF6751 Oxidoreductase, short-chain dehydrogenase/reductase family 0.45 0.50
    5 GFF3077 Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13) no 0.48
    6 GFF1209 hypothetical protein no 0.47
    7 GFF4567 Transcriptional regulator, LysR family no 0.47
    8 GFF1896 Two-component transcriptional response regulator, LuxR family no 0.47
    9 GFF1300 hypothetical protein no 0.46
    10 GFF1223 Aldo/keto reductase, SMc04056 family no 0.45
    11 GFF6949 no description no 0.45
    12 GFF6657 Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system no 0.45
    13 GFF2484 Urease beta subunit (EC 3.5.1.5) no 0.45
    14 GFF822 Na+/H+-dicarboxylate symporter no 0.44
    15 GFF6126 putative membrane protein no 0.43
    16 GFF1643 MbtH-like NRPS chaperone no 0.42
    17 GFF1326 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) 0.65 0.42
    18 GFF2199 Type I secretion outer membrane protein, TolC family no 0.42
    19 GFF5303 Tricarboxylate transport transcriptional regulator TctD 0.27 0.41
    20 GFF6324 Kup system potassium uptake protein 0.43 0.41

    Or look for negative cofitness