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    • Top cofit genes for GFF4531 from Variovorax sp. SCN45

    Pseudouridine synthase
    SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
    KEGG: ribosomal large subunit pseudouridine synthase F

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4512 no description no 0.51
    2 GFF5982 Transcriptional regulator, AcrR family no 0.48
    3 GFF2614 no description no 0.47
    4 GFF6089 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) no 0.46
    5 GFF5916 T6SS component TssA (ImpA) no 0.46
    6 GFF6918 Transcriptional regulator, AraC family no 0.46
    7 GFF5279 Fructokinase (EC 2.7.1.4) no 0.45
    8 GFF1507 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) no 0.44
    9 GFF6857 hypothetical protein no 0.44
    10 GFF6665 Autolysin sensor kinase (EC 2.7.3.-) no 0.44
    11 GFF5829 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.44
    12 GFF6517 Cation transport protein ChaC no 0.43
    13 GFF1449 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) no 0.43
    14 GFF4600 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.42
    15 GFF7371 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) no 0.41
    16 GFF3668 hypothetical protein no 0.41
    17 GFF5778 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) no 0.41
    18 GFF1259 no description no 0.40
    19 GFF2656 Acyltransferase 3 no 0.40
    20 GFF3390 Transcriptional activator of acetoin dehydrogenase operon AcoR no 0.40

    Or look for negative cofitness