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  • Top cofit genes for GFF4503 from Variovorax sp. SCN45

    RNA polymerase sigma factor
    SEED: RNA polymerase sigma factor
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2483 Urease alpha subunit (EC 3.5.1.5) 0.43 0.58
    2 GFF6411 Histidine ABC transporter, ATP-binding protein no 0.56
    3 GFF4940 FIG033889: YebC paralog in Betaproteobacteria no 0.53
    4 GFF2938 Rieske (2Fe-2S) domain protein no 0.53
    5 GFF4703 Xylitol dehydrogenase (EC 1.1.1.9) no 0.52
    6 GFF4528 Permease of the drug/metabolite transporter (DMT) superfamily no 0.52
    7 GFF4267 Transcriptional regulator, AraC family no 0.52
    8 GFF681 Hypothetical protein in cluster with At3g50560-like gene family no 0.51
    9 GFF1719 Transcriptional regulator, LysR family no 0.49
    10 GFF887 Small uncharacterized protein Bpro_4170 no 0.49
    11 GFF2625 hypothetical protein no 0.49
    12 GFF4928 hypothetical protein no 0.48
    13 GFF4675 no description no 0.48
    14 GFF5872 Inner membrane protein YbhQ no 0.47
    15 GFF3833 FIG01056426: hypothetical protein no 0.47
    16 GFF2827 Bacterioferritin (EC 1.16.3.1) no 0.47
    17 GFF419 hypothetical protein no 0.47
    18 GFF3987 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30) no 0.47
    19 GFF738 T6SS PAAR-repeat protein no 0.46
    20 GFF566 Type IV fimbrial biogenesis protein PilV no 0.46

    Or look for negative cofitness