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Cofit
Protein
Homologs
Top cofit genes for GFF4487 from
Variovorax sp. SCN45
putative secreted protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF1499
BUG/TctC family periplasmic protein
no
0.67
2
GFF907
Transcriptional regulator, LysR family
no
0.61
3
GFF3368
Pyrimidine permease
no
0.59
4
GFF1443
Excinuclease ABC subunit A paralog of unknown function
no
0.56
5
GFF6647
Two-component transcriptional response regulator, LuxR family
no
0.54
6
GFF6037
Transcriptional regulator, Crp/Fnr family
no
0.53
7
GFF6478
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
no
0.52
8
GFF4071
Butyryl-CoA dehydrogenase (EC 1.3.99.2)
no
0.51
9
GFF3969
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
no
0.50
10
GFF4931
peptidase, family M14
no
0.50
11
GFF6683
Efflux ABC transporter, permease protein
no
0.50
12
GFF4151
RidA/YER057c/UK114 superfamily, group 1
no
0.50
13
GFF5630
hypothetical protein
no
0.49
14
GFF1315
Cyclic di-GMP-binding protein BcsB
no
0.49
15
GFF2318
Transcriptional regulator ArgP, LysR family
no
0.49
16
GFF2685
DNA internalization-related competence protein ComEC/Rec2
no
0.49
17
GFF6649
Undecaprenyl-diphosphatase (EC 3.6.1.27)
no
0.49
18
GFF5487
Thymidine phosphorylase (EC 2.4.2.4)
no
0.49
19
GFF1363
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
no
0.49
20
GFF1317
no description
no
0.49
Or look for
negative cofitness