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  • Top cofit genes for GFF4487 from Variovorax sp. SCN45

    putative secreted protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1499 BUG/TctC family periplasmic protein no 0.67
    2 GFF907 Transcriptional regulator, LysR family no 0.61
    3 GFF3368 Pyrimidine permease no 0.59
    4 GFF1443 Excinuclease ABC subunit A paralog of unknown function no 0.56
    5 GFF6647 Two-component transcriptional response regulator, LuxR family no 0.54
    6 GFF6037 Transcriptional regulator, Crp/Fnr family no 0.53
    7 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) no 0.52
    8 GFF4071 Butyryl-CoA dehydrogenase (EC 1.3.99.2) no 0.51
    9 GFF3969 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) no 0.50
    10 GFF4931 peptidase, family M14 no 0.50
    11 GFF6683 Efflux ABC transporter, permease protein no 0.50
    12 GFF4151 RidA/YER057c/UK114 superfamily, group 1 no 0.50
    13 GFF5630 hypothetical protein no 0.49
    14 GFF1315 Cyclic di-GMP-binding protein BcsB no 0.49
    15 GFF2318 Transcriptional regulator ArgP, LysR family no 0.49
    16 GFF2685 DNA internalization-related competence protein ComEC/Rec2 no 0.49
    17 GFF6649 Undecaprenyl-diphosphatase (EC 3.6.1.27) no 0.49
    18 GFF5487 Thymidine phosphorylase (EC 2.4.2.4) no 0.49
    19 GFF1363 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.49
    20 GFF1317 no description no 0.49

    Or look for negative cofitness