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  • Top cofit genes for GFF4455 from Variovorax sp. SCN45

    TonB protein
    KEGG: periplasmic protein TonB

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6732 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) no 0.63
    2 GFF5490 Uncharacterized protein with LysM domain, COG1652 0.79 0.62
    3 GFF5412 no description no 0.62
    4 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) 0.43 0.62
    5 GFF5319 Type IV pilus biogenesis protein PilM 0.78 0.62
    6 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.61
    7 GFF5417 hypothetical protein no 0.61
    8 GFF993 Type IV pilus biogenesis protein PilF 0.81 0.61
    9 GFF5419 Type IV pilus biogenesis protein PilE 0.72 0.61
    10 GFF5323 Type IV pilus biogenesis protein PilQ 0.78 0.60
    11 GFF4432 Two-component system response regulator protein no 0.60
    12 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.60
    13 GFF5322 Type IV pilus biogenesis protein PilP 0.78 0.60
    14 GFF3886 Putative transmembrane protein no 0.60
    15 GFF2510 Type IV fimbrial assembly, ATPase PilB 0.81 0.60
    16 GFF2619 Rhs-family protein no 0.60
    17 GFF3826 Response regulator receiver:LytTr DNA-binding region no 0.59
    18 GFF3068 FIG00538108: hypothetical protein 0.81 0.59
    19 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.59
    20 GFF1096 Phosphate transport system regulatory protein PhoU no 0.59

    Or look for negative cofitness