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Cofit
Protein
Homologs
Top cofit genes for GFF4455 from
Variovorax sp. SCN45
TonB protein
KEGG: periplasmic protein TonB
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF6732
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)
no
0.63
2
GFF5490
Uncharacterized protein with LysM domain, COG1652
0.79
0.62
3
GFF5412
no description
no
0.62
4
GFF3825
Autolysin sensor kinase (EC 2.7.3.-)
0.43
0.62
5
GFF5319
Type IV pilus biogenesis protein PilM
0.78
0.62
6
GFF5416
Type IV fimbrial biogenesis protein PilW
no
0.61
7
GFF5417
hypothetical protein
no
0.61
8
GFF993
Type IV pilus biogenesis protein PilF
0.81
0.61
9
GFF5419
Type IV pilus biogenesis protein PilE
0.72
0.61
10
GFF5323
Type IV pilus biogenesis protein PilQ
0.78
0.60
11
GFF4432
Two-component system response regulator protein
no
0.60
12
GFF5418
Type IV fimbrial biogenesis protein PilY1
no
0.60
13
GFF5322
Type IV pilus biogenesis protein PilP
0.78
0.60
14
GFF3886
Putative transmembrane protein
no
0.60
15
GFF2510
Type IV fimbrial assembly, ATPase PilB
0.81
0.60
16
GFF2619
Rhs-family protein
no
0.60
17
GFF3826
Response regulator receiver:LytTr DNA-binding region
no
0.59
18
GFF3068
FIG00538108: hypothetical protein
0.81
0.59
19
GFF2519
FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
no
0.59
20
GFF1096
Phosphate transport system regulatory protein PhoU
no
0.59
Or look for
negative cofitness