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  • Top cofit genes for GFF4433 from Variovorax sp. SCN45

    1,6-anhydro-N-acetylmuramyl-L-alanine amidase
    SEED: N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD
    KEGG: AmpD protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3823 FIG00581576: hypothetical protein no 0.68
    2 GFF3946 Probable low-affinity inorganic phosphate transporter no 0.62
    3 GFF3875 beta-N-acetylglucosaminidase (EC 3.2.1.52) 0.68 0.58
    4 GFF1852 FHA domain protein no 0.54
    5 GFF6424 Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) no 0.54
    6 GFF5668 Uncharacterized MFS-type transporter no 0.53
    7 GFF494 RND efflux system, membrane fusion protein no 0.53
    8 GFF5858 heme uptake regulator no 0.53
    9 GFF4380 Transcriptional regulator, Xre family no 0.52
    10 GFF6721 Transcriptional regulator, LysR family no 0.52
    11 GFF6532 Phosphoglucomutase (EC 5.4.2.2) @ Phosphomannomutase (EC 5.4.2.8) 0.66 0.52
    12 GFF4655 SAM-dependent methyltransferase no 0.51
    13 GFF4783 Penicillin acylase (EC 3.5.1.11) no 0.51
    14 GFF6156 Aerobic carbon monoxide dehydrogenase (quinone), medium chain (EC 1.2.5.3) no 0.51
    15 GFF1349 Thioesterase no 0.51
    16 GFF459 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily / DUF3471 domain no 0.51
    17 GFF2975 SAM-dependent methyltransferase no 0.51
    18 GFF3392 Transcriptional regulator, AraC family no 0.51
    19 GFF3938 Intracellular protease no 0.50
    20 GFF282 hypothetical protein no 0.50

    Or look for negative cofitness