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Cofit
Protein
Homologs
Top cofit genes for GFF4429 from
Variovorax sp. SCN45
Inner membrane protein YpjD
SEED: CcsA-related protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4166
Cytidine deaminase (EC 3.5.4.5)
no
0.69
2
GFF3772
Arginase (EC 3.5.3.1)
no
0.67
3
GFF6990
hypothetical protein
no
0.61
4
GFF6070
Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13)
no
0.60
5
GFF3018
VgrG protein
no
0.59
6
GFF1874
4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)
no
0.58
7
GFF3159
Sulfite dehydrogenase (quinone), molybdopterin-containing subunit SoeA (EC 1.8.5.6)
no
0.58
8
GFF4329
Enoyl-CoA hydratase (EC 4.2.1.17)
no
0.57
9
GFF1572
Transcriptional regulator, LysR family
no
0.56
10
GFF3156
FIG00441737: hypothetical protein
no
0.55
11
GFF5449
Probable lipoprotein YiaD
no
0.55
12
GFF4583
TRAP-type C4-dicarboxylate transport system, large permease component
no
0.55
13
GFF2594
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
no
0.54
14
GFF6126
putative membrane protein
no
0.54
15
GFF189
Negative transcriptional regulator
no
0.54
16
GFF6197
ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines)
no
0.54
17
GFF2840
Integral membrane protein, interacts with FtsH
no
0.53
18
GFF3738
Uncharacterized protein YraP
no
0.53
19
GFF6706
ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)
no
0.52
20
GFF2127
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
no
0.52
Or look for
negative cofitness