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  • Top cofit genes for GFF4422 from Variovorax sp. SCN45

    Conjugative transfer protein TrbG
    SEED: Conjugative transfer protein TrbG
    KEGG: type IV secretion system protein VirB9

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5020 Tripartite tricarboxylate transporter TctB family no 0.64
    2 GFF1313 Cellulose synthase operon protein C no 0.55
    3 GFF975 4-hydroxyphenylacetate 3-monooxygenase (EC 1.14.14.9) no 0.55
    4 GFF3877 Uncharacterized chaperone protein YegD no 0.53
    5 GFF6304 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) no 0.50
    6 GFF1754 Nicel/Cobalt-specific TonB-dependent outer membrane receptor no 0.50
    7 GFF4218 no description no 0.49
    8 GFF262 Phage repressor protein cI no 0.48
    9 GFF5860 no description no 0.47
    10 GFF3285 ATP-dependent Clp protease ATP-binding subunit ClpA no 0.47
    11 GFF3851 Uncharacterized MFS-type transporter no 0.46
    12 GFF2311 Putative PRS2 protein no 0.45
    13 GFF5840 hypothetical protein no 0.45
    14 GFF3880 Cell division integral membrane protein, YggT and half-length relatives no 0.45
    15 GFF973 PQQ-dependent oxidoreductase, gdhB family no 0.45
    16 GFF3909 Aconitate hydratase (EC 4.2.1.3) no 0.45
    17 GFF957 Aminobutyraldehyde dehydrogenase (EC 1.2.1.19) no 0.45
    18 GFF1177 Serine protease no 0.44
    19 GFF5313 Protein-methionine-sulfoxide reductase catalytic subunit MsrP no 0.44
    20 GFF3863 RNA polymerase sigma factor RpoE no 0.44

    Or look for negative cofitness