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  • Top cofit genes for GFF4411 from Variovorax sp. SCN45

    Conjugative transfer protein TrbK
    SEED: probable lipoprotein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5148 Taurine ABC transporter, substrate-binding protein TauA no 0.52
    2 GFF3667 Uncharacterized MFS-type transporter no 0.50
    3 GFF2865 Uncharacterized MFS-type transporter no 0.49
    4 GFF6345 Cytochrome c2 no 0.49
    5 GFF4928 hypothetical protein no 0.48
    6 GFF7124 Mobile element protein no 0.48
    7 GFF6347 AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination no 0.48
    8 GFF7185 no description no 0.48
    9 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.47
    10 GFF6837 BUG/TctC family periplasmic protein no 0.47
    11 GFF1318 hypothetical protein no 0.47
    12 GFF2723 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit no 0.46
    13 GFF6318 Uncharacterized MFS-type transporter no 0.46
    14 GFF4089 Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4) no 0.46
    15 GFF419 hypothetical protein no 0.46
    16 GFF4867 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.46
    17 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.45
    18 GFF6937 Membrane protein no 0.45
    19 GFF5920 no description no 0.45
    20 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) no 0.45

    Or look for negative cofitness