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  • Top cofit genes for GFF4408 from Variovorax sp. SCN45

    3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type
    KEGG: fatty-acyl-CoA synthase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4407 Alkan-1-ol dehydrogenase, PQQ-dependent (EC 1.1.99.20) 0.17 0.68
    2 GFF4406 Alkane-1 monooxygenase (EC 1.14.15.3) no 0.66
    3 GFF456 Transcriptional regulator, AraC family no 0.63
    4 GFF1119 Ribonuclease HI (EC 3.1.26.4) no 0.62
    5 GFF4409 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.62
    6 GFF5429 Iron(III) dicitrate transport protein FecA no 0.59
    7 GFF3920 FIG00467295: hypothetical protein no 0.58
    8 GFF2835 putative TonB-dependent receptor no 0.58
    9 GFF2836 MotA/TolQ/ExbB proton channel family protein no 0.58
    10 GFF2505 hypothetical protein no 0.58
    11 GFF6392 hypothetical protein no 0.57
    12 GFF531 hypothetical protein no 0.57
    13 GFF5433 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.57
    14 GFF1848 Proteins incorrectly called adenylate cyclase no 0.56
    15 GFF5002 ABC-type branched-chain amino acid transport systems, periplasmic component no 0.56
    16 GFF6627 Mobile element protein no 0.55
    17 GFF2103 Regulatory protein, LuxR:Tetratricopeptide TPR_4 no 0.55
    18 GFF4244 Acid phosphatase (EC 3.1.3.2) no 0.55
    19 GFF6698 ClpXP protease specificity-enhancing factor SspB no 0.55
    20 GFF2555 FIG00932538: hypothetical protein no 0.55

    Or look for negative cofitness