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  • Top cofit genes for GFF4407 from Variovorax sp. SCN45

    Alkan-1-ol dehydrogenase, PQQ-dependent (EC 1.1.99.20)
    SEED: Choline dehydrogenase (EC 1.1.99.1)
    KEGG:

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4406 Alkane-1 monooxygenase (EC 1.14.15.3) no 0.73
    2 GFF4409 Aldehyde dehydrogenase (EC 1.2.1.3) no 0.70
    3 GFF4408 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type no 0.68
    4 GFF1119 Ribonuclease HI (EC 3.1.26.4) no 0.67
    5 GFF557 Plectin 1 no 0.66
    6 GFF7323 Transcriptional response regulatory protein GlrR no 0.64
    7 GFF2836 MotA/TolQ/ExbB proton channel family protein no 0.62
    8 GFF5429 Iron(III) dicitrate transport protein FecA no 0.61
    9 GFF2835 putative TonB-dependent receptor no 0.61
    10 GFF508 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.60
    11 GFF3758 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) no 0.59
    12 GFF6392 hypothetical protein no 0.58
    13 GFF494 RND efflux system, membrane fusion protein 0.25 0.57
    14 GFF5160 Outer membrane protein W precursor 0.36 0.57
    15 GFF2103 Regulatory protein, LuxR:Tetratricopeptide TPR_4 no 0.56
    16 GFF4396 Mobile element protein no 0.56
    17 GFF233 Putative activity regulator of membrane protease YbbK no 0.56
    18 GFF5291 Ferrichrome-iron receptor no 0.53
    19 GFF6333 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) no 0.53
    20 GFF4426 Homolog of eukaryotic DNA ligase III no 0.53

    Or look for negative cofitness