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  • Top cofit genes for GFF4394 from Variovorax sp. SCN45

    FIG00613342: Bacterial patatin-like phospholipase domain containing protein
    SEED: UPF0028 protein YchK

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4987 3-fumarylpyruvate hydrolase (EC 3.7.1.20) no 0.53
    2 GFF2953 Transcriptional regulator, AraC family no 0.49
    3 GFF4310 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.44
    4 GFF1275 2-dehydropantoate 2-reductase (EC 1.1.1.169) no 0.43
    5 GFF6372 T6SS component TssB (ImpB/VipA) no 0.43
    6 GFF5460 3-oxo-tetronate 4-phosphate decarboxylase no 0.42
    7 GFF2317 FIG015287: Zinc protease 0.40 0.41
    8 GFF3948 Acetyltransferase, GNAT family no 0.41
    9 GFF7029 hypothetical protein no 0.41
    10 GFF7362 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.40
    11 GFF5635 Molybdenum ABC transporter permease protein ModB 0.36 0.40
    12 GFF356 L-asparaginase (EC 3.5.1.1) no 0.40
    13 GFF2717 Epimerase KguE 0.48 0.40
    14 GFF6098 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.40
    15 GFF2502 O-antigen acetylase no 0.39
    16 GFF6643 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.38
    17 GFF4783 Penicillin acylase (EC 3.5.1.11) no 0.38
    18 GFF2769 Transcriptional regulator, AcrR family no 0.38
    19 GFF2662 Deacetylases, including yeast histone deacetylase and acetoin utilization protein 0.37 0.38
    20 GFF1292 Macrolide-specific efflux protein MacA no 0.37

    Or look for negative cofitness