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  • Top cofit genes for GFF4389 from Variovorax sp. SCN45

    Type IV secretory pathway, VirD2 components (relaxase)
    SEED: Type IV secretory pathway, VirD2 components (relaxase)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF485 hypothetical protein no 0.58
    2 GFF6157 Carbon monoxide oxidation accessory protein CoxD no 0.58
    3 GFF2550 Dihydroneopterin triphosphate pyrophosphohydrolase type 2 no 0.58
    4 GFF5856 Outer membrane receptor proteins, likely involved in siderophore uptake no 0.56
    5 GFF4784 no description no 0.55
    6 GFF3844 Transcriptional regulator, LysR family no 0.54
    7 GFF5623 Metal-dependent amidase/aminoacylase/carboxypeptidase no 0.53
    8 GFF6149 FAD-dependent oxidoreductase no 0.52
    9 GFF4003 FIGfam005179 no 0.52
    10 GFF5840 hypothetical protein no 0.52
    11 GFF1443 Excinuclease ABC subunit A paralog of unknown function no 0.51
    12 GFF1218 O-antigen acetylase no 0.51
    13 GFF1313 Cellulose synthase operon protein C no 0.51
    14 GFF4771 Multidrug efflux system EmrAB-OMF, inner-membrane proton/drug antiporter EmrB (MFS type) no 0.51
    15 GFF1315 Cyclic di-GMP-binding protein BcsB no 0.50
    16 GFF3285 ATP-dependent Clp protease ATP-binding subunit ClpA no 0.50
    17 GFF6333 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) no 0.50
    18 GFF4931 peptidase, family M14 no 0.49
    19 GFF765 hypothetical protein no 0.49
    20 GFF2388 hypothetical protein no 0.49

    Or look for negative cofitness