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  • Top cofit genes for GFF436 from Variovorax sp. SCN45

    LrgA-associated membrane protein LrgB
    SEED: LrgA-associated membrane protein LrgB

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2119 Type IV fimbrial biogenesis protein PilW no 0.64
    2 GFF336 no description no 0.59
    3 GFF1610 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) no 0.57
    4 GFF2892 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) 0.26 0.55
    5 GFF4698 Transcriptional regulator of various polyols utilization, AraC family no 0.52
    6 GFF6863 DipZ protein no 0.51
    7 GFF63 Putative glycosyltransferase no 0.51
    8 GFF1705 ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) / C-terminal AAA-associated domain no 0.50
    9 GFF4998 L-carnitine dehydratase/bile acid-inducible protein F 0.18 0.50
    10 GFF56 hypothetical protein no 0.50
    11 GFF3701 FIG004694: Hypothetical protein no 0.49
    12 GFF4424 FIG00956188: hypothetical protein no 0.49
    13 GFF4151 RidA/YER057c/UK114 superfamily, group 1 no 0.48
    14 GFF3200 hypothetical protein no 0.47
    15 GFF95 hypothetical protein no 0.47
    16 GFF1363 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.47
    17 GFF973 PQQ-dependent oxidoreductase, gdhB family 0.52 0.46
    18 GFF4539 no description no 0.46
    19 GFF5845 NAD synthetase (EC 6.3.1.5) no 0.46
    20 GFF2318 Transcriptional regulator ArgP, LysR family 0.60 0.46

    Or look for negative cofitness