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  • Top cofit genes for GFF4336 from Variovorax sp. SCN45

    BUG/TctC family periplasmic protein
    SEED: Tricarboxylate transport protein TctC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3816 hypothetical protein no 0.57
    2 GFF2493 YheO-like PAS domain no 0.57
    3 GFF1041 Transcriptional regulator, AsnC family no 0.56
    4 GFF4984 Tricarboxylate transport protein TctC no 0.54
    5 GFF6496 Tannase and feruloyl esterase no 0.54
    6 GFF4175 FMN reductase (NADH) (EC 1.5.1.42) no 0.53
    7 GFF195 RidA/YER057c/UK114 superfamily, group 1 no 0.51
    8 GFF6675 ortholog of Bordetella pertussis (BX470248) BP3300 no 0.50
    9 GFF3581 Transcriptional regulator, ArsR family no 0.49
    10 GFF6030 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) no 0.48
    11 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis no 0.48
    12 GFF886 Protein of unknown function DUF1446 no 0.47
    13 GFF4123 no description no 0.47
    14 GFF75 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.47
    15 GFF4957 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.47
    16 GFF85 Transcriptional regulator, LysR family no 0.47
    17 GFF582 Two-component system sensor histidine kinase no 0.46
    18 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) no 0.45
    19 GFF4685 Copper sensory histidine kinase CusS no 0.45
    20 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA no 0.45

    Or look for negative cofitness