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  • Top cofit genes for GFF432 from Variovorax sp. SCN45

    Probable transcription regulator protein of MDR efflux pump cluster
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4864 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) no 0.58
    2 GFF5300 ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.53
    3 GFF2396 MlrC no 0.50
    4 GFF5865 Probable iron export permease protein FetB no 0.48
    5 GFF4572 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.48
    6 GFF263 Secreted and surface protein containing fasciclin-like repeats no 0.48
    7 GFF142 Oxidoreductase no 0.47
    8 GFF3827 UPF0118 membrane protein SMc00793 no 0.47
    9 GFF6439 Transcriptional regulator, LysR family no 0.46
    10 GFF3912 Ferrous iron transport permease EfeU no 0.46
    11 GFF4902 hypothetical protein no 0.46
    12 GFF2334 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.45
    13 GFF3414 Fumarylacetoacetase (EC 3.7.1.2) no 0.45
    14 GFF859 Lactoylglutathione lyase (EC 4.4.1.5) no 0.45
    15 GFF4940 FIG033889: YebC paralog in Betaproteobacteria no 0.45
    16 GFF5027 Aldehyde dehydrogenase B (EC 1.2.1.22) 0.68 0.45
    17 GFF4262 hypothetical protein no 0.45
    18 GFF264 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.45
    19 GFF3204 no description no 0.45
    20 GFF5435 Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), plant type no 0.45

    Or look for negative cofitness