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  • Top cofit genes for GFF4307 from Variovorax sp. SCN45

    ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate)
    SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
    KEGG: branched-chain amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF512 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.64
    2 GFF4247 no description no 0.59
    3 GFF6398 SH3, type 3 no 0.59
    4 GFF4614 Transcriptional regulator, AraC family no 0.59
    5 GFF6757 no description no 0.58
    6 GFF5575 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases no 0.56
    7 GFF6953 Universal stress protein UspA and related nucleotide-binding proteins no 0.56
    8 GFF706 hypothetical protein no 0.55
    9 GFF6867 no description no 0.55
    10 GFF1341 ABC transporter, ATP-binding protein 2 RSc1754 no 0.54
    11 GFF3373 Hydroxymethylglutaryl-CoA reductase (EC 1.1.1.34) no 0.53
    12 GFF5459 3-oxo-tetronate kinase no 0.53
    13 GFF1455 DNA polymerase II (EC 2.7.7.7) no 0.52
    14 GFF1951 no description no 0.52
    15 GFF6335 no description no 0.51
    16 GFF5148 Taurine ABC transporter, substrate-binding protein TauA no 0.51
    17 GFF7355 1,2-phenylacetyl-CoA epoxidase, subunit A (EC 1.14.13.149) no 0.50
    18 GFF5401 2-keto-3-deoxy-L-fuconate dehydrogenase no 0.49
    19 GFF6819 hypothetical protein no 0.49
    20 GFF2789 Peptidyl-tRNA hydrolase ArfB (EC 3.1.1.29) no 0.49

    Or look for negative cofitness