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  • Top cofit genes for GFF4299 from Variovorax sp. SCN45

    3-ketoacyl-CoA thiolase
    SEED: Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16)
    KEGG: acetyl-CoA C-acetyltransferase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5654 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) no 0.57
    2 GFF1848 Proteins incorrectly called adenylate cyclase no 0.54
    3 GFF6734 Transcriptional regulator, AraC family no 0.53
    4 GFF2480 Urease accessory protein UreG no 0.51
    5 GFF4121 no description no 0.51
    6 GFF3401 P-hydroxylaminobenzoate lyase no 0.50
    7 GFF3165 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) no 0.49
    8 GFF5579 probable bifunctional hydroxylase/oxidoreductase no 0.49
    9 GFF4310 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.49
    10 GFF5160 Outer membrane protein W precursor no 0.48
    11 GFF4373 FIG131328: Predicted ATP-dependent endonuclease of the OLD family no 0.48
    12 GFF650 Response regulator no 0.48
    13 GFF5916 T6SS component TssA (ImpA) no 0.47
    14 GFF2208 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily no 0.47
    15 GFF215 RNA polymerase sigma-54 factor RpoN no 0.47
    16 GFF765 hypothetical protein no 0.47
    17 GFF7183 hypothetical protein no 0.46
    18 GFF4916 FIG00959407: hypothetical protein no 0.46
    19 GFF2729 hypothetical protein no 0.46
    20 GFF5982 Transcriptional regulator, AcrR family no 0.45

    Or look for negative cofitness