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  • Top cofit genes for GFF4298 from Variovorax sp. SCN45

    2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    SEED: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
    KEGG: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5412 no description no 0.72
    2 GFF3886 Putative transmembrane protein no 0.71
    3 GFF3068 FIG00538108: hypothetical protein no 0.68
    4 GFF33 Type IV pilus biogenesis protein PilZ no 0.66
    5 GFF5490 Uncharacterized protein with LysM domain, COG1652 no 0.66
    6 GFF2155 Signal transduction histidine kinase CheA no 0.66
    7 GFF5419 Type IV pilus biogenesis protein PilE no 0.65
    8 GFF4893 FIG00640418: hypothetical protein no 0.65
    9 GFF5323 Type IV pilus biogenesis protein PilQ no 0.65
    10 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.65
    11 GFF5417 hypothetical protein no 0.65
    12 GFF2847 histone-like nucleoid-structuring protein H-NS no 0.65
    13 GFF4439 Probable transmembrane protein no 0.64
    14 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.64
    15 GFF2509 Type IV fimbrial assembly protein PilC no 0.64
    16 GFF6100 no description no 0.64
    17 GFF2154 twitching motility protein PilJ no 0.63
    18 GFF3826 Response regulator receiver:LytTr DNA-binding region no 0.63
    19 GFF993 Type IV pilus biogenesis protein PilF no 0.63
    20 GFF5321 Type IV pilus biogenesis protein PilO no 0.63

    Or look for negative cofitness