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  • Top cofit genes for GFF428 from Variovorax sp. SCN45

    Efflux transport system, outer membrane factor (OMF) lipoprotein
    SEED: RND efflux system, outer membrane lipoprotein CmeC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5475 Uncharacterized MFS-type transporter no 0.65
    2 GFF3999 GMP reductase (EC 1.7.1.7) no 0.59
    3 GFF3224 no description no 0.55
    4 GFF1640 Polyketide synthase modules and related proteins no 0.54
    5 GFF4849 Conjugative transfer protein TrbB no 0.54
    6 GFF6207 Allantoin racemase (EC 5.1.99.3) no 0.53
    7 GFF5221 Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) no 0.52
    8 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.50
    9 GFF4939 hypothetical protein no 0.50
    10 GFF5106 Permease of the drug/metabolite transporter (DMT) superfamily no 0.49
    11 GFF4668 hypothetical protein no 0.48
    12 GFF3058 Demethylmenaquinone methyltransferase-like protein no 0.47
    13 GFF7271 Transcriptional regulator, LacI family no 0.47
    14 GFF6928 Putative transmembrane protein no 0.46
    15 GFF1995 Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1) no 0.46
    16 GFF5179 Acetyltransferase, GNAT family no 0.46
    17 GFF6427 ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate) no 0.46
    18 GFF5029 Transcriptional regulator, IclR family no 0.46
    19 GFF6810 no description no 0.45
    20 GFF4856 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) no 0.44

    Or look for negative cofitness