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Cofit
Protein
Homologs
Top cofit genes for GFF4264 from
Variovorax sp. SCN45
surface antigen gene
SEED: surface antigen gene
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4485
FIG00715336: hypothetical protein
no
0.61
2
GFF2379
Serine/threonine protein kinase
no
0.59
3
GFF6003
no description
no
0.59
4
GFF2151
twitching motility protein PilG
no
0.58
5
GFF5145
hypothetical protein
no
0.56
6
GFF3718
Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB (EC 3.5.1.110)
no
0.56
7
GFF3825
Autolysin sensor kinase (EC 2.7.3.-)
no
0.56
8
GFF183
Virulence protein
no
0.56
9
GFF2154
twitching motility protein PilJ
no
0.56
10
GFF3153
Two-component transcriptional response regulator, LuxR family
no
0.56
11
GFF2508
Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-)
no
0.56
12
GFF5487
Thymidine phosphorylase (EC 2.4.2.4)
no
0.55
13
GFF2510
Type IV fimbrial assembly, ATPase PilB
no
0.55
14
GFF3826
Response regulator receiver:LytTr DNA-binding region
no
0.55
15
GFF1232
Uncharacterized protein conserved in bacteria
no
0.55
16
GFF5117
Transcriptional regulator, LysR family
no
0.55
17
GFF5323
Type IV pilus biogenesis protein PilQ
no
0.54
18
GFF5414
hypothetical protein
no
0.54
19
GFF5319
Type IV pilus biogenesis protein PilM
no
0.54
20
GFF5490
Uncharacterized protein with LysM domain, COG1652
no
0.54
Or look for
negative cofitness