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  • Top cofit genes for GFF4261 from Variovorax sp. SCN45

    RNA polymerase ECF-type sigma factor
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1186 Ferrichrome-iron receptor no 0.58
    2 GFF5609 Transcriptional regulator, LuxR family no 0.58
    3 GFF803 MutT/Nudix family protein no 0.57
    4 GFF420 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) no 0.55
    5 GFF6841 hypothetical protein no 0.53
    6 GFF6207 Allantoin racemase (EC 5.1.99.3) no 0.52
    7 GFF5732 Methyl-accepting chemotaxis sensor/transducer protein no 0.51
    8 GFF6805 FIG00821908: hypothetical protein no 0.50
    9 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.48
    10 GFF5865 Probable iron export permease protein FetB no 0.48
    11 GFF5573 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 0.47 0.48
    12 GFF266 RND efflux system, inner membrane transporter no 0.48
    13 GFF3154 no description no 0.48
    14 GFF3238 no description no 0.47
    15 GFF5239 hypothetical protein no 0.46
    16 GFF1481 L-carnitine dehydratase/bile acid-inducible protein F no 0.46
    17 GFF2157 UPF0301 protein YqgE no 0.45
    18 GFF3441 Hypothetical protein VC0266 (sugar utilization related?) no 0.45
    19 GFF5199 Galactofuranose ABC transporter, permease protein 2 no 0.45
    20 GFF2093 Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase) no 0.45

    Or look for negative cofitness