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  • Top cofit genes for GFF4259 from Variovorax sp. SCN45

    Transcriptional regulator, DeoR family
    SEED: Transcriptional regulator, DeoR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1648 Ligand-binding SRPBCC domain protein family no 0.65
    2 GFF2107 no description no 0.64
    3 GFF4828 no description no 0.62
    4 GFF2179 hypothetical protein no 0.58
    5 GFF4972 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) no 0.56
    6 GFF468 Transcriptional regulator, LysR family no 0.55
    7 GFF1574 Alpha-aminoadipate aminotransferase (EC 2.6.1.39) @ Leucine transaminase (EC 2.6.1.6) @ Valine transaminase no 0.55
    8 GFF2189 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) 0.29 0.55
    9 GFF2397 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.52
    10 GFF3177 hypothetical protein no 0.52
    11 GFF5600 no description no 0.51
    12 GFF1665 Nicotinamidase/isochorismatase family protein no 0.51
    13 GFF7060 BUG/TctC family periplasmic protein no 0.50
    14 GFF1971 Creatinine amidohydrolase (EC 3.5.2.10) no 0.50
    15 GFF1329 Peptide-methionine (R)-S-oxide reductase MsrB (EC 1.8.4.12) 0.21 0.50
    16 GFF1629 Ferric reductase (1.6.99.14) no 0.50
    17 GFF3589 Transcriptional regulator, LysR family no 0.50
    18 GFF6815 FIG00453801: hypothetical protein no 0.50
    19 GFF5127 no description no 0.50
    20 GFF3549 FIG01127675: hypothetical protein no 0.50

    Or look for negative cofitness