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  • Top cofit genes for GFF4250 from Variovorax sp. SCN45

    Transcriptional regulator, AcrR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6675 ortholog of Bordetella pertussis (BX470248) BP3300 no 0.53
    2 GFF7210 Hydroxymethylpyrimidine ABC transporter, transmembrane component no 0.51
    3 GFF4957 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.50
    4 GFF6669 hypothetical protein no 0.45
    5 GFF923 Chromosome partition protein smc no 0.45
    6 GFF6974 no description no 0.44
    7 GFF7029 hypothetical protein no 0.43
    8 GFF4149 hypothetical protein no 0.43
    9 GFF4984 Tricarboxylate transport protein TctC no 0.43
    10 GFF1725 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system no 0.42
    11 GFF6355 T6SS secretion lipoprotein TssJ (VasD) no 0.41
    12 GFF694 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-) no 0.41
    13 GFF5221 Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) no 0.40
    14 GFF5202 hypothetical protein no 0.38
    15 GFF6092 Penicillin G acylase precursor (EC 3.5.1.11) no 0.38
    16 GFF7009 hypothetical protein no 0.38
    17 GFF2178 Methyl-accepting chemotaxis sensor/transducer protein no 0.38
    18 GFF467 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.37
    19 GFF2642 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.37
    20 GFF405 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30) no 0.37

    Or look for negative cofitness