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  • Top cofit genes for GFF4185 from Variovorax sp. SCN45

    RNA polymerase ECF-type sigma factor
    SEED: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1042 Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18) no 0.58
    2 GFF7199 Alkanesulfonates-binding protein no 0.54
    3 GFF785 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system no 0.53
    4 GFF6681 TonB-dependent siderophore receptor no 0.53
    5 GFF5211 Alkaline phosphatase (EC 3.1.3.1) no 0.53
    6 GFF35 FOG: Ankyrin repeat no 0.52
    7 GFF567 KEGG: type IV fimbrial biogenesis protein FimT no 0.52
    8 GFF6800 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.51
    9 GFF7162 DNA helicase II related protein no 0.51
    10 GFF592 Glutamyl-Q tRNA(Asp) synthetase no 0.51
    11 GFF3216 hypothetical protein no 0.50
    12 GFF2322 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) no 0.50
    13 GFF429 RND efflux system, inner membrane transporter no 0.50
    14 GFF2613 no description no 0.50
    15 GFF2182 Inner membrane component of TAM transport system no 0.49
    16 GFF942 Iron-sulfur cluster-binding protein no 0.49
    17 GFF7356 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) no 0.49
    18 GFF5602 FIG00348944: hypothetical protein no 0.48
    19 GFF3923 Kynurenine formamidase, bacterial (EC 3.5.1.9) no 0.48
    20 GFF7161 Transcriptional regulator, LysR family no 0.48

    Or look for negative cofitness