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  • Top cofit genes for GFF4182 from Variovorax sp. SCN45

    Extracytoplasmic function (ECF) sigma factor VreI
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF687 Dihydroxy-acid dehydratase (EC 4.2.1.9) no 0.56
    2 GFF1148 hypothetical protein no 0.53
    3 GFF5669 hypothetical protein no 0.51
    4 GFF5804 FIG00978734: hypothetical protein no 0.50
    5 GFF3670 Two-component system sensor histidine kinase no 0.50
    6 GFF3360 no description no 0.49
    7 GFF843 no description no 0.49
    8 GFF4023 no description no 0.48
    9 GFF3229 hypothetical protein no 0.46
    10 GFF6160 Dehydrogenase molybdenum cofactor insertion protein, XdhC/CoxF family no 0.45
    11 GFF2020 BUG/TctC family periplasmic protein no 0.45
    12 GFF519 Transcriptional regulator, AcrR family no 0.45
    13 GFF6364 VgrG protein no 0.45
    14 GFF5243 General secretion pathway protein H no 0.45
    15 GFF1093 Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1) no 0.45
    16 GFF1020 hypothetical protein no 0.44
    17 GFF288 no description no 0.44
    18 GFF2084 Phosphatidate cytidylyltransferase (EC 2.7.7.41) no 0.44
    19 GFF847 Acetyltransferase no 0.44
    20 GFF6521 Auxin efflux carrier family protein no 0.44

    Or look for negative cofitness