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  • Top cofit genes for GFF4133 from Sphingobium sp. HT1-2

    tRNA-5-carboxymethylaminomethyl-2- thiouridine(34) synthesis protein MnmE
    SEED: GTPase and tRNA-U34 5-formylation enzyme TrmE
    KEGG: tRNA modification GTPase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3047 Two-component oxygen-sensor histidine kinase FixL no 0.83
    2 GFF3263 Ferrous iron transporter FeoB 0.49 0.83
    3 GFF3855 hypothetical protein no 0.81
    4 GFF1150 tRNA-dihydrouridine synthase DusB 0.67 0.81
    5 GFF3758 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) 0.84 0.80
    6 GFF2283 Quinone oxidoreductase (EC 1.6.5.5) no 0.79
    7 GFF3759 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) 0.86 0.78
    8 GFF2596 hypothetical protein no 0.77
    9 GFF1148 Nitrogen regulation protein NR(I), GlnG (=NtrC) 0.61 0.77
    10 GFF2832 Maltodextrin glucosidase (EC 3.2.1.20) 0.56 0.77
    11 GFF3576 hypothetical protein no 0.77
    12 GFF957 Transcriptional regulator, LysR family no 0.77
    13 GFF148 ATP-dependent protease subunit HslV (EC 3.4.25.2) 0.36 0.77
    14 GFF3352 TonB-dependent receptor no 0.76
    15 GFF2286 ATP-dependent Clp protease ATP-binding subunit ClpA 0.81 0.76
    16 GFF1660 NADP-dependent malic enzyme (EC 1.1.1.40) 0.45 0.76
    17 GFF3760 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit no 0.76
    18 GFF2007 Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated no 0.76
    19 GFF785 Ammonium transporter no 0.76
    20 GFF3275 Heparinase II/III-like no 0.76

    Or look for negative cofitness