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  • Top cofit genes for GFF4128 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines)
    SEED: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
    KEGG: peptide/nickel transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4322 Acyl-CoA dehydrogenase no 0.63
    2 GFF3573 Efflux ABC transporter, ATP-binding protein no 0.60
    3 GFF1416 no description no 0.56
    4 GFF5671 FIG01964566: Predicted membrane protein, hemolysin III homolog no 0.54
    5 GFF5468 FAD/FMN-containing dehydrogenase no 0.54
    6 GFF2585 no description no 0.54
    7 GFF3378 hypothetical protein 0.24 0.53
    8 GFF1137 FIG00348850: hypothetical protein no 0.53
    9 GFF1556 Tricarboxylate transport protein TctC no 0.53
    10 GFF1592 Response regulator/GGDEF/EAL domain protein no 0.52
    11 GFF769 Conserved TM helix no 0.52
    12 GFF1678 Transcriptional regulator, GntR family no 0.51
    13 GFF2692 hypothetical protein no 0.50
    14 GFF2139 Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) no 0.50
    15 GFF6253 Phosphonate ABC transporter substrate-binding protein PhnD (TC 3.A.1.9.1) no 0.50
    16 GFF2422 Polysaccharide deacetylase no 0.50
    17 GFF1377 Phosphohydrolase (MutT/nudix family protein) no 0.50
    18 GFF1405 hypothetical protein no 0.50
    19 GFF3000 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2) no 0.49
    20 GFF7221 Protein lysine acetyltransferase Pat (EC 2.3.1.-) no 0.49

    Or look for negative cofitness