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  • Top cofit genes for PS417_21065 from Pseudomonas simiae WCS417

    3-methylitaconate isomerase
    SEED: 2-methylaconitate cis-trans isomerase
    KEGG: hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_23730 LysR family transcriptional regulator 0.80 0.46
    2 PS417_17565 branched-chain amino acid aminotransferase 0.80 0.45
    3 PS417_25705 lipoate--protein ligase 0.46 0.44
    4 PS417_13835 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) 0.81 0.42
    5 PS417_17560 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) 0.77 0.42
    6 PS417_21070 aconitate hydratase 0.98 0.41
    7 PS417_17550 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 0.90 0.39
    8 PS417_17545 2-oxoisovalerate dehydrogenase 0.90 0.39
    9 PS417_12665 hypothetical protein 0.67 0.38
    10 PS417_20580 isocitrate dehydrogenase 0.89 0.34
    11 PS417_27210 AsnC family transcriptional regulator 0.72 0.33
    12 PS417_13840 isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) 0.80 0.32
    13 PS417_13180 AraC family transcriptional regulator 0.50 0.32
    14 PS417_23725 methylmalonate-semialdehyde dehydrogenase 0.91 0.31
    15 PS417_01180 ribosomal protein S6 modification protein 0.35 0.31
    16 PS417_15935 Rrf2 family transcriptional regulator no 0.30
    17 PS417_22520 histidine kinase 0.45 0.29
    18 PS417_19335 isochorismatase 0.63 0.28
    19 PS417_00900 4-aminobutyrate aminotransferase 0.32 0.26
    20 PS417_06525 beta-lactamase no 0.26

    Or look for negative cofitness