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  • Top cofit genes for GFF4096 from Sphingobium sp. HT1-2

    Lipopolysaccharide biosynthesis protein
    SEED: Lipopolysaccharide biosynthesis protein WzxC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1714 putative membrane protein no 0.86
    2 GFF3325 YdcF-like protein no 0.86
    3 GFF3352 TonB-dependent receptor no 0.85
    4 GFF2781 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.2.8) no 0.84
    5 GFF2248 Inner membrane component of TAM transport system no 0.84
    6 GFF1148 Nitrogen regulation protein NR(I), GlnG (=NtrC) no 0.84
    7 GFF3473 ATP synthase protein I no 0.83
    8 GFF2286 ATP-dependent Clp protease ATP-binding subunit ClpA no 0.83
    9 GFF1275 Lysophospholipid transporter LplT no 0.83
    10 GFF1149 Nitrogen regulation protein NtrB (EC 2.7.13.3) no 0.83
    11 GFF776 RNA polymerase sigma-54 factor RpoN no 0.83
    12 GFF2007 Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated no 0.82
    13 GFF3759 Ubiquinol-cytochrome C reductase, cytochrome B subunit (EC 1.10.2.2) 0.16 0.82
    14 GFF3462 Transcriptional regulator, LysR family no 0.82
    15 GFF785 Ammonium transporter no 0.82
    16 GFF2791 Two-component system sensor histidine kinase no 0.81
    17 GFF143 PhbF no 0.81
    18 GFF1150 tRNA-dihydrouridine synthase DusB no 0.81
    19 GFF3480 ATP-dependent RNA helicase Atu1833 no 0.80
    20 GFF4227 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) no 0.80

    Or look for negative cofitness