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  • Top cofit genes for GFF4085 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional activator protein LysR

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4018 Arsenate reductase (EC 1.20.4.4) thioredoxin-coupled, LMWP family no 0.64
    2 GFF4632 Glycosyl transferase, family 2 no 0.58
    3 GFF7266 L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16) no 0.57
    4 GFF5085 hypothetical protein no 0.57
    5 GFF3451 no description no 0.57
    6 GFF4827 FIG00348957: hypothetical protein no 0.56
    7 GFF1332 no description no 0.55
    8 GFF3450 Transcriptional regulator, LacI family no 0.55
    9 GFF7284 Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) no 0.55
    10 GFF4580 hypothetical protein no 0.55
    11 GFF3075 Surface antigen no 0.55
    12 GFF1788 hypothetical protein no 0.54
    13 GFF1356 Putative manganese efflux pump MntP no 0.54
    14 GFF4611 Predicted transcriptional regulator for fatty acid degradation FadP, TetR family no 0.54
    15 GFF1520 Transcriptional regulator, IclR family no 0.53
    16 GFF5782 BUG/TctC family periplasmic protein no 0.53
    17 GFF7017 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.52
    18 GFF3145 Two-component system response regulator QseB no 0.52
    19 GFF3720 Alternative dihydrofolate reductase 3 no 0.52
    20 GFF6664 Putative transmembrane protein no 0.51

    Or look for negative cofitness