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  • Top cofit genes for GFF4047 from Sphingobium sp. HT1-2

    RNA polymerase ECF-type sigma factor
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF819 RNA binding S1 domain protein no 0.89
    2 GFF2594 Efflux ABC transporter, permease/ATP-binding protein no 0.86
    3 GFF4106 PDZ domain family protein no 0.86
    4 GFF2595 hypothetical protein no 0.85
    5 GFF4046 anti-FecI sigma factor FecR no 0.85
    6 GFF4190 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme no 0.84
    7 GFF3483 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2) no 0.83
    8 GFF5034 hypothetical protein no 0.83
    9 GFF2791 Two-component system sensor histidine kinase no 0.83
    10 GFF2286 ATP-dependent Clp protease ATP-binding subunit ClpA no 0.81
    11 GFF1149 Nitrogen regulation protein NtrB (EC 2.7.13.3) no 0.81
    12 GFF636 hypothetical protein no 0.80
    13 GFF2599 Quinohemoprotein amine dehydrogenase alpha subunit (EC 1.4.99.-) no 0.80
    14 GFF776 RNA polymerase sigma-54 factor RpoN no 0.80
    15 GFF785 Ammonium transporter no 0.80
    16 GFF1148 Nitrogen regulation protein NR(I), GlnG (=NtrC) no 0.79
    17 GFF4202 hypothetical protein no 0.78
    18 GFF2771 Methylamine utilization protein MauD no 0.78
    19 GFF5293 Mobile element protein no 0.78
    20 GFF3818 Phosphocarrier protein, nitrogen regulation associated no 0.77

    Or look for negative cofitness