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  • Top cofit genes for PS417_20565 from Pseudomonas simiae WCS417

    RNA polymerase subunit sigma-24
    SEED: RNA polymerase sigma factor RpoE
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_17350 copper resistance protein CopD 0.57 0.21
    2 PS417_20310 hypothetical protein no 0.20
    3 PS417_10470 membrane protein no 0.19
    4 PS417_15250 DNA repair protein no 0.19
    5 PS417_28260 VdlD no 0.19
    6 PS417_21120 phosphoserine phosphatase no 0.18
    7 PS417_07995 LOG family protein no 0.18
    8 PS417_20125 phosphoribosylglycinamide formyltransferase no 0.18
    9 PS417_01380 nucleotide cyclase no 0.18
    10 PS417_24495 NAD(FAD)-utilizing dehydrogenase 0.57 0.18
    11 PS417_08285 ATPase no 0.18
    12 PS417_12840 TetR family transcriptional regulator no 0.17
    13 PS417_20260 copper oxidase 0.17 0.17
    14 PS417_18425 sporulation protein no 0.17
    15 PS417_21840 chemotaxis protein 0.75 0.17
    16 PS417_20140 nucleoprotein/polynucleotide-associated enzyme no 0.17
    17 PS417_23730 LysR family transcriptional regulator no 0.17
    18 PS417_10710 GNAT family acetyltransferase no 0.17
    19 PS417_07705 phosphatase 0.43 0.17
    20 PS417_13370 short-chain dehydrogenase no 0.17

    Or look for negative cofitness