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  • Top cofit genes for GFF4014 from Variovorax sp. SCN45

    Transcriptional regulator, ArsR family
    SEED: Transcriptional regulator, ArsR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF721 O-acetyl-ADP-ribose deacetylase no 0.65
    2 GFF6290 RNA polymerase sigma-54 factor RpoN no 0.60
    3 GFF6075 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB no 0.58
    4 GFF2154 twitching motility protein PilJ no 0.57
    5 GFF4046 Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA no 0.57
    6 GFF1902 hypothetical protein no 0.57
    7 GFF984 Protein phosphatase 2C-like no 0.56
    8 GFF2508 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) no 0.56
    9 GFF5128 hypothetical protein no 0.56
    10 GFF2151 twitching motility protein PilG no 0.56
    11 GFF2520 UPF0053 inner membrane protein YtfL no 0.56
    12 GFF5415 Type IV fimbrial biogenesis protein PilV no 0.55
    13 GFF5414 hypothetical protein no 0.55
    14 GFF2510 Type IV fimbrial assembly, ATPase PilB no 0.55
    15 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.55
    16 GFF4432 Two-component system response regulator protein no 0.55
    17 GFF1947 no description no 0.55
    18 GFF5320 Type IV pilus biogenesis protein PilN no 0.55
    19 GFF2458 CzcABC family efflux RND transporter, membrane fusion protein no 0.55
    20 GFF2379 Serine/threonine protein kinase no 0.55

    Or look for negative cofitness