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  • Top cofit genes for GFF4009 from Variovorax sp. SCN45

    D-amino acid dehydrogenase (EC 1.4.99.6)
    SEED: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
    KEGG: D-amino-acid dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4485 FIG00715336: hypothetical protein no 0.66
    2 GFF2379 Serine/threonine protein kinase no 0.64
    3 GFF5322 Type IV pilus biogenesis protein PilP no 0.62
    4 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) no 0.62
    5 GFF5412 no description no 0.61
    6 GFF5323 Type IV pilus biogenesis protein PilQ 0.28 0.61
    7 GFF5490 Uncharacterized protein with LysM domain, COG1652 no 0.60
    8 GFF3826 Response regulator receiver:LytTr DNA-binding region 0.19 0.60
    9 GFF4432 Two-component system response regulator protein no 0.60
    10 GFF5319 Type IV pilus biogenesis protein PilM no 0.60
    11 GFF5487 Thymidine phosphorylase (EC 2.4.2.4) no 0.60
    12 GFF5419 Type IV pilus biogenesis protein PilE no 0.60
    13 GFF5320 Type IV pilus biogenesis protein PilN no 0.60
    14 GFF2634 FIG00464095: hypothetical protein no 0.60
    15 GFF5418 Type IV fimbrial biogenesis protein PilY1 no 0.60
    16 GFF2510 Type IV fimbrial assembly, ATPase PilB no 0.59
    17 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.59
    18 GFF993 Type IV pilus biogenesis protein PilF no 0.59
    19 GFF5321 Type IV pilus biogenesis protein PilO 0.25 0.59
    20 GFF2151 twitching motility protein PilG no 0.59

    Or look for negative cofitness