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  • Top cofit genes for GFF4007 from Variovorax sp. SCN45

    Glutamate carboxypeptidase (EC 3.4.17.11)
    SEED: Glutamate carboxypeptidase (EC 3.4.17.11)
    KEGG: glutamate carboxypeptidase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1743 Transcriptional regulator, LysR family no 0.59
    2 GFF2207 Flp pilus assembly protein TadB no 0.58
    3 GFF6114 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.53
    4 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) no 0.52
    5 GFF3056 Nitrogen assimilation regulatory protein Nac no 0.52
    6 GFF1136 hypothetical protein no 0.52
    7 GFF6409 Histidine ammonia-lyase (EC 4.3.1.3) no 0.50
    8 GFF7384 hypothetical protein no 0.49
    9 GFF5322 Type IV pilus biogenesis protein PilP no 0.49
    10 GFF5999 DNA polymerase IV (EC 2.7.7.7) no 0.49
    11 GFF839 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) no 0.49
    12 GFF5319 Type IV pilus biogenesis protein PilM no 0.48
    13 GFF5857 Fe2+-dicitrate sensor, membrane component no 0.48
    14 GFF5416 Type IV fimbrial biogenesis protein PilW no 0.48
    15 GFF3826 Response regulator receiver:LytTr DNA-binding region no 0.48
    16 GFF2216 Uncharacterized protein Tbd_1903 no 0.48
    17 GFF5320 Type IV pilus biogenesis protein PilN no 0.48
    18 GFF6857 hypothetical protein no 0.48
    19 GFF4485 FIG00715336: hypothetical protein no 0.47
    20 GFF5323 Type IV pilus biogenesis protein PilQ no 0.47

    Or look for negative cofitness