Top cofit genes for GFF399 from Variovorax sp. SCN45

3'-to-5' exoribonuclease RNase R
SEED: 3'-to-5' exoribonuclease RNase R
KEGG: ribonuclease R

Rank Hit Name Description Conserved? Cofitness  
1 GFF3546 Chaperone protein HtpG 0.52 0.87
2 GFF4454 Exoribonuclease II (EC 3.1.13.1) no 0.86
3 GFF3960 3'-to-5' oligoribonuclease (orn) 0.49 0.85
4 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I 0.83 0.84
5 GFF5318 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) no 0.84
6 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.72 0.81
7 GFF6032 Branched-chain amino acid ABC transporter, permease protein LivM (TC 3.A.1.4.1) no 0.81
8 GFF5677 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) 0.63 0.80
9 GFF5876 Nitrogen regulation protein NtrY (EC 2.7.3.-) no 0.80
10 GFF4557 Dihydroorotase (EC 3.5.2.3) 0.58 0.80
11 GFF2523 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) 0.32 0.79
12 GFF3845 Ribonuclease E (EC 3.1.26.12) no 0.79
13 GFF7293 Ribosome hibernation promoting factor Hpf 0.85 0.79
14 GFF559 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.79
15 GFF4803 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) no 0.79
16 GFF6028 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like 0.51 0.79
17 GFF2852 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) 0.64 0.79
18 GFF2843 Murein hydrolase activator NlpD no 0.78
19 GFF2845 5'-nucleotidase SurE (EC 3.1.3.5) 0.59 0.78
20 GFF3067 Nitrogen regulation protein NtrB (EC 2.7.13.3) 0.54 0.78

Or look for negative cofitness