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  • Top cofit genes for GFF3977 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate)
    SEED: Branched-chain amino acid ABC transporter, periplasmic amino acid- binding protein
    KEGG: branched-chain amino acid transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2622 Putative transport protein no 0.46
    2 GFF507 Hydrolase, alpha/beta fold family no 0.46
    3 GFF3564 BUG/TctC family periplasmic protein no 0.45
    4 GFF3070 no description no 0.45
    5 GFF7214 Peptidase M20D, amidohydrolase no 0.42
    6 GFF1760 Probable transmembrane protein no 0.42
    7 GFF2201 hypothetical protein no 0.41
    8 GFF2939 hypothetical protein no 0.41
    9 GFF4709 putative membrane protein no 0.40
    10 GFF7415 no description no 0.40
    11 GFF480 Glycine betaine/L-proline transport ATP-binding protein ProV (TC 3.A.1.12.1) no 0.40
    12 GFF5504 Pyruvate kinase (EC 2.7.1.40) no 0.40
    13 GFF3818 hypothetical protein no 0.40
    14 GFF5991 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.39
    15 GFF5245 FIG00771430: hypothetical protein no 0.39
    16 GFF2337 hypothetical protein no 0.39
    17 GFF940 Permease of the drug/metabolite transporter (DMT) superfamily no 0.38
    18 GFF4190 no description no 0.38
    19 GFF4281 Transcriptional regulator, IclR family no 0.38
    20 GFF6160 Dehydrogenase molybdenum cofactor insertion protein, XdhC/CoxF family no 0.38

    Or look for negative cofitness